Articles
2023
26. Targeted control of supporting pathways in paclitaxel biosynthesis with CRISPR-guided methylation
C. B. Newton, M. McKee, E.M. Young, S. Roberts
Frontiers in Bioengineering and Biotechnology
Frontiers in Bioengineering and Biotechnology
25. Transcriptomics elucidates metabolic regulation and functional promoters in the basidiomycete red yeast Xanthophyllomyces dendrorhous CBS 6938
E.E. Tobin*, J.H. Collins*, C.B. Marsan, G.T. Nadeau, K. Mori, A. Lipzen, S. Mondo, I.V. Grigoriev, E.M. Young
* = equal contribution
Preprint, under review
* = equal contribution
Preprint, under review
24. A correlative study of the genomic underpinning of virulence traits and drug tolerance of Candida auris
B. Yang, B. Vaisvil, D. Schmitt, J.H. Collins, E.M. Young, V. Kapatral, R. Rao
Preprint, under review
Preprint, under review
23. Systematic part transfer by extending a modular toolkit to diverse bacteria
K.W. Keating and E.M. Young
ACS Synthetic Biology, bioRxiv
ACS Synthetic Biology, bioRxiv
22. Microstructure properties of optically clear bacterial cellulose produced using an alternative carbon source
E.M. van Zyl, M.A. Kennedy, W. Nason, R. Liu, S.J. Fenlon, E.M. Young, L.J. Smith, S.R. Bhatia, and J.M. Coburn
Biomaterials Advances
Biomaterials Advances
21. Genetic basis for probiotic phenotypes revealed by nanopore sequencing
J.H. Collins*, L. Kunyeit*, S. Weintraub, N. Sharma, C. White, N. Haq, K.A. Anu-Appaiah, R.P. Rao*, and E.M. Young*
* = equal contribution
Genes, Genomes, Genetics
* = equal contribution
Genes, Genomes, Genetics
20. Draft genome of the Ogataea polymorpha type strain CBS 4732
J.H. Collins and E.M. Young
Microbiology Resource Announcements.
Microbiology Resource Announcements.
2022
19. Discovering content through text mining for a Synthetic Biology Knowledge System
B.T. McInnes, J.S. Downie, Y. Hao, J. Jett, K. Keating, G. Nakum, S. Ranjan, N.E. Rodriguez, J. Tang, D. Xiang, E.M. Young, and M.H. Nguyen
ACS Synthetic Biology
ACS Synthetic Biology
18. Multicolor plater reader fluorescence calibration
J. Beal, C.A. Telmer, A. Vignoni, Y. Boada, G.S. Baldwin, L. Hallett, T. Lee, V. Selvarajah, S. Billerbeck, B. Brown, G. Cai, L. Cai, E. Eisenstein, D. Kiga, D. Ross, N. Alperovich, N. Sprent, J. Thompson, E.M. Young, D. Endy, T. Haddock-Angelli
Synthetic Biology
Synthetic Biology
2021
17. Engineered yeast genomes accurately assembled from pure and mixed samples
J. H. Collins, K. W. Keating, T. R. Jones, S. Balaji, C. B. Marsan, M. Como, Z. J. Newlon, T. Mitchell, B. Bartley, A. Adler, N. Roehner, and E. M. Young
Nature Communications
Nature Communications
16. Secondary metabolite production in plant cell culture: a new epigenetic frontier (Book Chapter)
C. Brzycki, E. M. Young, and S. Roberts
Ed. Sonia Malik
Exploring Plant Cells for the Production of Compounds of Interest, ISBN: 9783030582708
Ed. Sonia Malik
Exploring Plant Cells for the Production of Compounds of Interest, ISBN: 9783030582708
15. Synthetic Biology Knowledge System
J. Mante, Y. Hao, J. Jett, U. Joshi, K.W. Keating, X. Lu, G. Nakum, N.E. Rodriguez, J. Tang, L. Terry, X. Wu, E. Yu, J.S. Downie, B.T. McInnes, M.H. Nguyen, B. Sepulvado, E.M. Young, and C.J. Myers
ACS Synthetic Biology
ACS Synthetic Biology
14. Curation principles derived from the analysis of the SBOL iGEM dataset
J. Mante, N. Roehner, K.W. Keating, J. McLaughlin, E.M. Young, J. Beal, C.J. Myers
ACS Synthetic Biology
ACS Synthetic Biology
2020
13. Genetic circuit design automation for yeast
Y. Chen, S. Zhang, E. M. Young, T. S. Jones, D. Densmore, and C. A. Voigt
Nature Microbiology
Nature Microbiology
2019
12. Synthetic biology for bio-derived structural materials (Review)
K. W. Keating and E. M. Young
Current Opinion in Chemical Engineering
Current Opinion in Chemical Engineering
2018
11. Genetic engineering of host organisms for pharmaceutical synthesis (Review)
J. H. Collins and E. M. Young
Current Opinion in Biotechnology
Current Opinion in Biotechnology
10. Iterative algorithm-guided design of massive strain libraries, applied to itaconic acid production in yeast
E. M. Young, Z. Zhao, B. E. M. Gielesen, L. Wu, D. B. Gordon, J. A. Roubos, C. A. Voigt
Metabolic Engineering
Metabolic Engineering
9. A pressure test to make 10 molecules in 90 days: External evaluation of methods to engineer biology
A. Casini*, F.-Y. Chang*, R. Eleure*, A. King*, E. M. Young*, Q. M. Dudley, A. Karim, K. Pratt, C. Bristol, A. Forget, A. Ghodasara, R. Warden-Rothman, R. Gan, A. Cristofaro, A. E. Borujeni, M.-H. Ryu, J. Li, Y.-C. Kwon, H. Wang, E. Tatsis, C. Rodriguez-Lopez, S. O’Connor, M. H. Mdema, M. A. Fischbach, M. C. Jewett, C. A. Voigt , and D. B. Gordon (* = Equal contribution)
Journal of the American Chemical Society
Journal of the American Chemical Society
2017
8. Formation of nitrogenase nifDK tetramers in the mitochondria of Saccharomyces cerevisiae
S. Buren, E. M. Young, E. Sweeny, C. A. Voigt, and L. Rubio
ACS Synthetic Biology
ACS Synthetic Biology
2016
7. DoubleDutch: a tool for designing combinatorial libraries of metabolic pathway variants
N. Roehner, E. M. Young, C. A. Voigt, D. B. Gordon, and D. Densmore
ACS Synthetic Biology
ACS Synthetic Biology
2015
6. Chapter 12: Remaining challenges in the metabolic engineering of yeasts for biofuels (Book Chapter)
S.-M. Lee, E. M. Young, and H. S. Alper
Editor: M. E. Himmel
Direct Microbial Conversion of Biomass to Advanced Biofuels, ISBN: 9780444595928
Editor: M. E. Himmel
Direct Microbial Conversion of Biomass to Advanced Biofuels, ISBN: 9780444595928
2014
5. Rewiring yeast sugar transporter preference through modifying a conserved protein motif
E. M. Young, A. Tong, H. Bui, C. Spofford, and H. S. Alper
Proceedings of the National Academies of Science of the United States of America
Proceedings of the National Academies of Science of the United States of America
2012
4. A molecular transporter engineering approach to improving xylose catabolism in Saccharomyces cerevisiae
E. M. Young, A. D. Comer, H. Huang, and H. S. Alper
Metabolic Engineering
Metabolic Engineering
2011
3. Functional survey for heterologous sugar transport proteins, using Saccharomyces cerevisiae as a host
E. M. Young, A. Poucher, A. D. Comer, A. Bailey, and H. S. Alper
Applied and Environmental Microbiology
Applied and Environmental Microbiology
2010
2. Synthetic biology: Tools to design, build, and optimize cellular processes (Review)
E. M. Young and H. S. Alper
Journal of Biomedicine and Biotechnology
Journal of Biomedicine and Biotechnology
1. Optimizing pentose utilization in yeast: the need for novel tools and approaches (Review)
E. M. Young, S.-M. Lee, and H. S. Alper
Biotechnology for Biofuels
Biotechnology for Biofuels
Patents
2. Methods for Engineering Sugar Transporter Preferences
H. S. Alper and E. M. Young
Board of Regents, University of Texas System
U.S. Patent #9,926,347
WO2015069796
Board of Regents, University of Texas System
U.S. Patent #9,926,347
WO2015069796
1. Engineered Xylose Transporters with Reduced Glucose Inhibition
H. S. Alper, E. M. Young, and S.-M. Lee
Board of Regents, University of Texas System
U.S. Patent #9,695,223
WO2015179701
Board of Regents, University of Texas System
U.S. Patent #9,695,223
WO2015179701
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